Numerical methods for temporal networks
- Randomized reference models for temporal networks. arXiv preprint (2018).
- Temporal Gillespie Algorithm: Fast Simulation of Contagion Processes on Time-Varying Networks. PLoS Comput. Biol. (2015). C++ code on Github.
Modeling human interactions and infectious disease
- How memory generates heterogeneous dynamics in temporal networks. Phys. Rev. E (2014).
- Compensating for population sampling in simulations of epidemic spread on temporal contact networks. Nat. Commun. (2015).
Single molecule biophysics
- Optimal estimation of diffusion coefficients from single-particle trajectories Phys. Rev. E (2014).
- Harmonic force spectroscopy measures load-dependent kinetics of individual human beta-cardiac myosin molecules. Nat. Commun. (2015).
- Transition state theory demonstrated at the micron scale with out-of-equilibrium transport in a confined environment. Nat. Commun. (2016).